PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_450404EA6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 307aa    MW: 33541.3 Da    PI: 5.9688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_450404EA6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-2941091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilk 82 
                            +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a  ++  r+ +++sl+yeA+ r+ +P+yG+vg++++
  Traes_2AL_450404EA6.1   4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLWS 91 
                            6****************************************************977666***************************** PP

                 DUF260  83 lqqqleqlkaelallkee 100
                             ++q++q+++e++l +++
  Traes_2AL_450404EA6.1  92 NNWQMCQAAVEAVLSGKP 109
                            ***********9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.5E-871295IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.4453110IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD  60
SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA VEAVLSGKPI VQVSSEDAAA  120
DRTPPLKAYD IRHVSTSPAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPKPQ  180
PQTRAPTAEE ELDRQHRKEM EEGASQRAPS HESSDSRHED PVEPHCQQEA SADTEAEAGS  240
HVSQAEQEQE QSTEPAAEHA EEVEKEEDEE LALELTLGFA PVAVRPAGFH LSVRTAAEPA  300
FVGLRFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514260.0AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence.
GenBankAK3619130.0AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577486.17e-94PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8863e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW5ARQ60.0W5ARQ6_WHEAT; Uncharacterized protein
STRINGMLOC_58304.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-79LOB domain-containing protein 41
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]